Rv1484 - c.-397G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
2 RR-TB
23 HR-TB
3 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| 13 | |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.9 | 25 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 6 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.2.1 | 7 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| La1.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4 | 2 |
| lineage4.1.3 | 2 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9117709 | Other | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7240033 | Other | La1.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR9786843 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | SRR3675270 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4811142 | RR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR28119805 | Other | lineage4.9 | None | ERR9786671 | Other | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675457 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR29050859 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811311 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9787197 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6045053 | Other | lineage4 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12416824 | HR-TB | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR28119777 | Other | lineage4.9 | None |
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