Rv1484 - c.-61T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
2 RR-TB
28 HR-TB
3 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 6 |
| lineage3.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.9;lineage6.3 | 2 |
| 13 | |
| lineage4.9 | 24 |
| M.canetti;lineage2.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.2.1 | 6 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.2.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 2 |
| La1.7 | 1 |
| lineage4.1.1.1 | 1 |
| La3 | 2 |
| lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR9787197 | Other | None | ERR9786671 | Other | None | SRR26159048 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR9786604 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR176651 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465597 | Sensitive | lineage4.1.2.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR212123 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4816999 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR7535086 | Other | None | ERR4817893 | Other | lineage4.8 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR1184294 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR181887 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None |
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