lineage | Count |
---|---|
72 | |
lineage2.2.1 | 8 |
lineage4 | 34 |
lineage4.1 | 2 |
lineage3.1 | 2 |
lineage4.3.2.1 | 1 |
lineage4.1.2 | 1 |
lineage4.8 | 3 |
lineage4.4.1.2 | 1 |
lineage4.1.2.1 | 7 |
lineage4.9 | 5 |
lineage4.3.3 | 2 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
lineage4.1.1 | 1 |
lineage6 | 1 |
La1.8.1 | 1 |
lineage2 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage3 | 2 |
spoligotype | Count |
---|---|
None | 152 |
ID | Drug resistance | Lineage | Country iso2 | SRR6511621 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502943 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR5311081 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323066 | Sensitive | lineage4 | None | ERR323038 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR137286 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3468544 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR4188350 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4811142 | MDR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR736872 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR8976043 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | SRR1172234 | Other | None | SRR1158918 | Sensitive | lineage4 | None | ERR9787197 | Other | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1172857 | MDR-TB | None | SRR1173568 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173777 | Other | lineage4 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR12142341 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | SRR1640750 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675486 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675246 | Sensitive | lineage4 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675387 | Sensitive | None | SRR3675558 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341366 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693239 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341469 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR4821955 | Pre-XDR-TB | lineage3 | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None |
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