lineage | Count |
---|---|
lineage4 | 7 |
La3 | 1 |
139 | |
lineage2.2.1 | 4 |
lineage3.1 | 3 |
lineage4.9 | 10 |
lineage2 | 2 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
lineage4.1 | 1 |
lineage3.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 3 |
lineage4.3 | 1 |
lineage4.8;La3 | 1 |
lineage2.2 | 1 |
lineage4.1.2.1 | 6 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.3.4 | 1 |
lineage4.1.3 | 2 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.1.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage4.6.1.1 | 1 |
spoligotype | Count |
---|---|
None | 194 |
ID | Drug resistance | Lineage | Country iso2 | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1172951 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1196566 | HR-TB | None | SRR1173629 | Other | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1175049 | RR-TB | None | SRR1184294 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR14782405 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1640750 | HR-TB | None | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | SRR19428614 | HR-TB | lineage3.1.1 | None | SRR3675482 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161033 | HR-TB | None | ERR1949999 | Sensitive | lineage4.8 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675501 | HR-TB | None | ERR176643 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | SRR3675222 | Other | None | SRR3675311 | Other | None | ERR176751 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR2027263 | Other | lineage4 | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR5341302 | HR-TB | None | ERR234659 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4820757 | Sensitive | lineage4.9 | None | ERR2693230 | Other | None | SRR5341333 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2652953 | Sensitive | lineage4.9 | None | ERR2693254 | Other | None | SRR6045519 | HR-TB | None | ERR2693257 | Other | None | SRR6045952 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045399 | Other | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR8217918 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311081 | HR-TB | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | ERR323038 | HR-TB | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR3283027 | HR-TB | None | ERR1034652 | Other | None | ERR3283021 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797036 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4810741 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR4811142 | MDR-TB | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR9786617 | Other | lineage4.1.1 | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR736835 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR987722 | HR-TB | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None |
---|