Rv3596c - c.427_429delTCCinsAGT
Drug resistance types
5 Sensitive
2 RR-TB
16 HR-TB
4 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9 | 20 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1 | 6 |
| La1.7;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.1.1.1 | 1 |
| lineage4.5 | 1 |
| La3;lineage2.2.1 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;lineage4.9 | 2 |
| lineage2.2 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage1.1.2 | 1 |
| lineage4 | 1 |
| lineage4.4.2 | 1 |
| 1 | |
| lineage2.2.1.2;lineage7 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 66 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341330 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675387 | Other | lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR502912 | Other | lineage2.2.1 | None | SRR28119805 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6046878 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR6045053 | Other | lineage4 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None |
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