Rv0407 - c.180T>G
Drug resistance types
0 Sensitive
2 RR-TB
16 HR-TB
8 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
62 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 6 |
| lineage4.9 | 10 |
| 10 | |
| lineage2.2.1 | 3 |
| lineage2.1;lineage4.9 | 8 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.8 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La2;lineage4.9 | 1 |
| lineage3 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.1 | 2 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| La3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2 | 2 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 90 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| ERR3804155 | Other | lineage4.1.2.1 | None |
| ERR3797070 | Other | lineage4.9 | None |
| ERR9786642 | Other | lineage4.1.2.1 | None |
| ERR9787197 | Other | None | |
| ERR234659 | Other | None | |
| ERR4814352 | Other | lineage2.2.1 | None |
| ERR3283036 | Other | lineage2.1;lineage4.9 | None |
| ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR9786569 | Other | lineage4.8 | None |
| ERR4817893 | Other | La3;lineage4.8 | None |
| ERR736874 | Other | La3;lineage2.1;lineage4.9 | None |
| SRR1173629 | Other | lineage2.1;lineage4.9 | None |
| ERR1063839 | MDR-TB | La2;lineage2.2 | None |
| ERR3797069 | Other | lineage4.9 | None |
| SRR18003019 | Other | lineage2.2.1 | None |
| ERR9786682 | Other | lineage4.1.2.1 | None |
| SRR19303884 | Other | lineage2.1;lineage6.3 | None |
| ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| ERR1063857 | MDR-TB | La2;lineage4.9 | None |
| SRR3675216 | Other | lineage2.1;lineage4.9 | None |
| SRR6789626 | Other | None | |
| SRR6458423 | HR-TB | lineage2.2.1 | None |
| ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR4800341 | Other | lineage3 | None |
| ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None |
| ERR1034634 | HR-TB | lineage4.9 | None |
| ERR4797054 | Pre-XDR-TB | lineage2.1 | None |
| SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None |
| ERR323043 | Other | lineage2.1;lineage4.9 | None |
| ERR9786645 | Other | lineage4.6.2.2 | None |
| SRR7496472 | Other | lineage4.9 | None |
| SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| ERR9786601 | Other | lineage4.1.2.1 | None |
| ERR9786671 | Other | None | |
| SRR12142341 | HR-TB | lineage2.1 | None |
| ERR9786421 | Other | lineage4.1.2.1 | None |
| ERR9786604 | Other | None | |
| SRR6045242 | Other | lineage2.1;lineage4.9 | None |
| SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| SRR6046540 | Other | lineage2.1;lineage4.9 | None |
| ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None |
| SRR20969677 | HR-TB | La3;lineage2 | None |
| ERR3283019 | Other | lineage2.1;lineage4.9 | None |
| ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None |
| ERR9787139 | Other | lineage6.3.1 | None |
| SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None |
| ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None |
| SRR6046210 | Other | lineage4.9 | None |
| SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
| ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR15368973 | Other | lineage4.9 | None |
| ERR4815604 | Other | None | |
| ERR2027263 | Other | lineage4 | None |
| SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None |
| ERR4797588 | MDR-TB | lineage3 | None |
| ERR3804169 | HR-TB | lineage4.1.3 | None |
| ERR9786611 | HR-TB | lineage4.1.3 | None |
| SRR1172817 | Other | La3 | None |
| SRR3675581 | Other | lineage2.1;lineage4.9 | None |
| ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None |
| SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
| SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None |
| ERR3283025 | MDR-TB | La1.7;lineage4.9 | None |
| ERR6866807 | Other | lineage4.9 | None |
| SRR3675465 | Other | lineage4.9;lineage6.3 | None |
| ERR9786694 | Other | lineage4.1.2.1 | None |
| SRR1173778 | Other | lineage4.9 | None |
| ERR4818021 | Other | La1.2.BCG;La1.8.1 | None |
| ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None |
| ERR4810624 | MDR-TB | lineage2.2 | None |
| ERR6358755 | Other | lineage4.6.1.1 | None |
| SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
| SRR18213713 | HR-TB | None | |
| ERR4819932 | Other | lineage4.7 | None |
| SRR7496517 | Other | None | |
| ERR4816585 | Other | lineage2.2 | None |
| SRR14801759 | HR-TB | La1.7;lineage4.9 | None |
| ERR4769521 | RR-TB | lineage4.9 | None |
| SRR15014655 | Other | M.canetti;lineage1 | None |
| SRR3675236 | Other | None | |
| ERR176793 | Other | lineage4.1.1.1 | None |
| SRR3675524 | Other | lineage4.9;lineage6.3 | None |
| SRR8217918 | HR-TB | lineage4.9 | None |
| ERR5336148 | Other | lineage2.1;lineage6.3 | None |
| SRR7496509 | Other | None | |
| SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
