lineage | Count |
---|---|
lineage4.9 | 9 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
91 | |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 3 |
lineage4 | 5 |
lineage2.2.1.1 | 1 |
lineage4.1.2.1 | 7 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 1 |
La1 | 2 |
lineage4.1.3 | 2 |
La1.8.1 | 1 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
lineage2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.5 | 2 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 138 |
ID | Drug resistance | Lineage | Country iso2 | SRR26159043 | Other | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675465 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR181744 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | ERR212034 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675456 | HR-TB | None | SRR3675510 | Other | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2693231 | Other | None | SRR5341418 | Other | None | ERR2693232 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323036 | HR-TB | None | SRR6789626 | Other | None | ERR502889 | Other | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | ERR323063 | HR-TB | None | ERR3468544 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3797016 | HR-TB | None | ERR387051 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358837 | HR-TB | None | ERR5336148 | Other | None | ERR9786604 | Other | None | ERR736839 | Other | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR702404 | HR-TB | None | ERR736848 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861566 | Other | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR13861376 | Other | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None |
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