Rv0407 - c.555C>G
Drug resistance types
21 Sensitive
2 RR-TB
39 HR-TB
5 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| 15 | |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage2.1 | 3 |
| lineage4.1.2.1 | 5 |
| lineage1.2.2.2 | 4 |
| lineage2.2.1 | 5 |
| lineage2.1;lineage4.9 | 13 |
| lineage4.9 | 24 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3 | 13 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.7 | 1 |
| La3;lineage1.1.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage4.9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.4 | 7 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3;lineage4.8 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2.2 | 1 |
| La3 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.6.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25827682 | Other | None | ERR212001 | HR-TB | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR28046218 | HR-TB | lineage1.2.2.2 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1196768 | MDR-TB | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR7069448 | Sensitive | lineage3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4819932 | Other | lineage4.7 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR2512887 | Sensitive | lineage3 | gb | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675236 | Other | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4816478 | HR-TB | lineage4 | None | ERR9117759 | Other | lineage3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR21690079 | HR-TB | lineage1.2.2.2 | None | ERR4797530 | Sensitive | lineage4.4 | in | SRR1184294 | Other | lineage4.9 | None | ERR4816722 | Sensitive | lineage4.4 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR2514843 | Sensitive | lineage3 | gb | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR18213713 | HR-TB | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR28044304 | HR-TB | lineage1.2.2.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR18213958 | Sensitive | lineage4.4 | None | ERR2514417 | Sensitive | lineage3 | gb | ERR4821186 | Sensitive | lineage4.4 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR28868741 | Sensitive | lineage4.4 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR7535086 | Other | None | ERR4800341 | Other | lineage3 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR4816656 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7070629 | Sensitive | lineage3 | None | ERR3797070 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675221 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR28119752 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2513958 | Sensitive | lineage3 | gb | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR7070663 | Sensitive | lineage3 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR161037 | Other | lineage4.9 | None | ERR4814565 | Sensitive | lineage4.4 | None | ERR4818312 | Sensitive | lineage4.4 | gb | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR22251436 | HR-TB | lineage1.2.2.2 | None | ERR702406 | Other | lineage2.1 | None | SRR7069360 | Sensitive | lineage3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR7068885 | Other | lineage3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR9117773 | Sensitive | lineage3 | None | ERR9786645 | Other | lineage4.6.2.2 | None |
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