Rv3601c - p.Asp34Glu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
1 RR-TB
26 HR-TB
5 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.9 | 56 |
| lineage2.2.1.2 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1 | 6 |
| lineage4 | 2 |
| lineage4.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| 2 | |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1;lineage4.9 | 2 |
| lineage4.5 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR12708416 | Sensitive | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR1063896 | Sensitive | None | ERR502511 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None |
|---|
