lineage | Count |
---|---|
128 | |
lineage4.9 | 10 |
lineage4.1.2.1 | 5 |
lineage3.1 | 4 |
lineage4.2.1.1 | 1 |
lineage2.2 | 2 |
La2 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4 | 22 |
lineage4.3.2 | 1 |
lineage4.3.3 | 2 |
lineage4.4.1.1 | 1 |
lineage2 | 1 |
lineage3.1.2;lineage1.1.2 | 1 |
lineage4.5 | 1 |
lineage2.2.2 | 1 |
lineage4.1 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 3 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 1 |
lineage3 | 1 |
spoligotype | Count |
---|---|
None | 194 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046492 | Other | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046824 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6511621 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6325442 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323038 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7585435 | Other | lineage4.9 | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323063 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR1034652 | Other | None | ERR3283017 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283027 | HR-TB | None | ERR5336148 | Other | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797069 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4811105 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR736839 | Other | None | ERR4811142 | MDR-TB | None | ERR6358837 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR4811493 | HR-TB | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR736865 | HR-TB | None | ERR736848 | HR-TB | None | ERR736874 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | SRR1158918 | Sensitive | lineage4 | None | ERR987722 | HR-TB | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1173629 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173400 | Other | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1174897 | HR-TB | None | SRR1184388 | Other | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1175090 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | ERR4815604 | HR-TB | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR8692782 | Other | lineage4.9 | None | SRR25340949 | Pre-XDR-TB | lineage3.1.2;lineage1.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | ERR8025501 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675502 | Other | None | ERR161033 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675550 | Other | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176751 | HR-TB | None | ERR212034 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR1035162 | Other | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816656 | HR-TB | None | ERR234659 | HR-TB | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341387 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818615 | Other | None | SRR5341418 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR4821655 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None |
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