Rv2752c - c.1041G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
7 Sensitive
3 RR-TB
26 HR-TB
4 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 2 |
| lineage4.9 | 12 |
| 19 | |
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9 | 10 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 8 |
| La1.7;lineage4.9 | 3 |
| lineage4 | 1 |
| lineage4.6.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1 | 10 |
| lineage4.1.1.1 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| lineage2.1 | 2 |
| lineage2.2.1.2 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 111 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3804155 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR234659 | Other | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4800341 | Other | None | ERR4810741 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797070 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786604 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4811311 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR9117709 | Other | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9787197 | Other | None | ERR4817060 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR6358991 | HR-TB | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR702406 | Other | lineage2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None |
|---|
