lineage | Count |
---|---|
lineage4 | 42 |
91 | |
lineage2 | 2 |
lineage1.1.2 | 1 |
lineage3 | 1 |
lineage4.6.1.1 | 1 |
La1.2 | 1 |
lineage2.2 | 4 |
lineage4.1.2.1 | 6 |
lineage6.3.1 | 1 |
lineage4.8 | 3 |
lineage4.1.3 | 2 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage4.9 | 10 |
lineage3.1 | 2 |
lineage2.2.1 | 10 |
lineage4.3.3 | 1 |
lineage4.5 | 1 |
La1.8.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.1.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage2.1 | 1 |
lineage1.2.1.1 | 1 |
lineage4.3 | 1 |
lineage4.8;La3 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.1 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 195 |
ID | Drug resistance | Lineage | Country iso2 | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798406 | HR-TB | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4799378 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6198317 | Other | La1.2 | None | ERR9117709 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6866410 | Sensitive | None | ERR702406 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR6866022 | Other | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808805 | Sensitive | None | ERR9634265 | Sensitive | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1173400 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1173568 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173777 | Other | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR15368973 | Other | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR14801749 | Sensitive | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR1791747 | Other | La1.8.1 | None | SRR25827682 | Other | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR3675221 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR158583 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | SRR3675311 | Other | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | SRR3675555 | HR-TB | None | SRR3675550 | Other | None | SRR3675572 | Other | None | ERR4817060 | RR-TB | None | ERR4816466 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818929 | HR-TB | None | ERR234659 | HR-TB | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341333 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR6046066 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6044790 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4830353 | Other | None | SRR6046540 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6511621 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR502889 | Other | None | SRR7496509 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | ERR067681 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323107 | Other | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1034634 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR3283040 | HR-TB | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3439432 | Other | None | ERR3797015 | HR-TB | None | ERR3797069 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR4407463 | HR-TB | None |
---|