Rv0001 - c.888C>G


Drug resistance types
27 Sensitive 0 RR-TB 26 HR-TB 20 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 25 Other
lineage Counts
lineage Count
lineage4.9 44
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.1;lineage4.9 1
lineage4.3.3 1
lineage2.2.1 4
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage3 1
lineage4.2.1.1;lineage4.3.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 2
lineage4.3.4 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.1 1
lineage4.1.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage1;lineage4.9 2
La1.7;lineage4.9 3
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage1.1.1;lineage4 1
lineage4.1.1.3;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.2.1;lineage4 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.2.1 1
La1;lineage4.9 1
lineage4.4.1.1 1
La1.7.1;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage4.4.1.2 1
lineage5.1.4 1
M.canetti;lineage4.9;lineage9 1
1
La1.2;La1.8.1 1
La1.7;lineage3.1;lineage4 1
La1.7.1;La1.7.X-unk4 1
lineage4.5 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.2;lineage4.6.3;lineage4.9 1
spoligotype Counts
spoligotype Count
None 99
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6044819 Sensitive lineage4.9 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
SRR12708419 Other lineage4.3.3 None
ERR1034634 HR-TB lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR11252736 Other lineage4.9 None
SRR28044873 Pre-XDR-TB lineage3 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR400320 Sensitive lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR3797015 HR-TB lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4769439 HR-TB lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR736831 Other lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR473332 Other lineage4.9 None
ERR3283040 HR-TB lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4816466 HR-TB lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
SRR1175508 Sensitive lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR5341323 Sensitive lineage4.9 None
SRR3675522 Other lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR12708384 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR2513283 Sensitive lineage5.1.4 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR181824 MDR-TB lineage4.9 None
SRR12708416 Sensitive None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR176651 Other lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR181887 Other lineage4.9 None
ERR400345 Other lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR176778 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR400326 Other lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None