lineage | Count |
---|---|
lineage4.6.5 | 2 |
lineage1.1.1.1 | 1 |
lineage2.2.1 | 9 |
lineage4.9 | 26 |
lineage4.3.4.2.1 | 4 |
lineage3 | 8 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.1.2.1 | 7 |
lineage4 | 6 |
La1.6 | 1 |
3 | |
lineage4.8 | 16 |
lineage4.1.1.3 | 2 |
lineage4.3.4.2 | 1 |
lineage4.3.3 | 3 |
lineage3.1.1 | 1 |
lineage4.1.1.3.1;lineage3.1.2 | 1 |
lineage6.3.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.2.2.2 | 1 |
lineage4.6.1.1 | 3 |
lineage4.6.1 | 1 |
lineage4.6.1.2 | 1 |
lineage2.2.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.5;lineage2.2.1 | 1 |
lineage1.1.3.3 | 1 |
lineage4.9;La1.3 | 1 |
lineage1.1.3.2 | 1 |
spoligotype | Count |
---|---|
None | 106 |
ID | Drug resistance | Lineage | Country iso2 | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140736 | RR-TB | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR11972327 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815909 | Other | lineage4.8 | None | ERR4817131 | Pre-XDR-TB | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4817301 | Other | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR2229810 | Other | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817976 | HR-TB | lineage4.1.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4818977 | RR-TB | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820503 | Other | lineage2.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | ERR4828879 | MDR-TB | lineage3 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821417 | Other | lineage1.1.3.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR7535053 | Sensitive | lineage3 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR11465645 | Sensitive | lineage4.3.4.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | ERR10796559 | Other | lineage4.9 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR019855 | Other | lineage3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | ERR017781 | Other | lineage3 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796584 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796624 | Other | lineage4.8 | None | ERR10796634 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796630 | HR-TB | None | ERR4187652 | Other | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR2514801 | Other | lineage1.1.3.2 | gb |
---|