Rv0005 - c.1107C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
45 Sensitive
3 RR-TB
16 HR-TB
8 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| lineage2.1 | 1 |
| lineage4.2.1 | 28 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1 | 4 |
| lineage4.1.2 | 2 |
| lineage4.3.3 | 2 |
| lineage2.1;lineage4.9 | 5 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.2.1 | 5 |
| 10 | |
| lineage4.1.1.3 | 6 |
| La1.6;lineage4 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage6 | 1 |
| lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 125 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR108471 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR7070307 | Sensitive | lineage4.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR7069740 | Sensitive | lineage4.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1172857 | Other | None | ERR4831406 | Sensitive | lineage4.2.1 | de | ERR234659 | Other | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR2516515 | Sensitive | lineage4.1.1.3 | pe | ERR2513006 | Sensitive | lineage4.2.1 | gb | ERR2513040 | Sensitive | lineage4.2.1 | gb | ERR2514706 | Sensitive | lineage4.2.1 | gb | ERR2514638 | Sensitive | lineage4.2.1 | gb | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR6866807 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR7070129 | Sensitive | La3 | None | ERR4818098 | Sensitive | lineage4.2.1 | None | ERR11050821 | Sensitive | lineage4.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11082254 | Sensitive | lineage4.2.1 | None | SRR7069732 | Sensitive | lineage4.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR12549784 | Sensitive | lineage4.2.1 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR11049328 | Sensitive | lineage4.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | ERR4828997 | Sensitive | lineage4.1.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4025073 | Sensitive | lineage4.1.1.3 | None | ERR9027249 | Sensitive | lineage4.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513529 | Sensitive | lineage4.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR11049324 | Sensitive | lineage4.2.1 | None | SRR7070228 | Sensitive | lineage4.2.1 | None | ERR6866049 | Sensitive | lineage4.1.1.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1173400 | Other | lineage4.9 | None | SRR21798471 | Sensitive | lineage4.2.1 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR7069403 | Sensitive | lineage4.2.1 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR4815996 | Sensitive | lineage4.2.1 | gb | ERR4821647 | Sensitive | lineage4.2.1 | gb | ERR2512817 | Sensitive | lineage4.2.1 | gb | ERR2513334 | Sensitive | lineage4.2.1 | gb | ERR2512452 | Sensitive | lineage4.1.2.1 | gb | ERR2513309 | Sensitive | lineage4.2.1 | gb | ERR9786604 | Other | None | SRR1173363 | Other | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1173562 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4816675 | Sensitive | lineage4.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1173355 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR2512826 | Sensitive | La3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR7070404 | Sensitive | lineage4.2.1 | None | ERR1035157 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | ERR4024562 | Sensitive | lineage4.1.1.3 | None | ERR4797201 | Other | None | SRR29050859 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9787030 | Sensitive | lineage6 | None | SRR1196546 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4821723 | Sensitive | lineage4.2.1 | None | SRR30182773 | Sensitive | La3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR6866046 | Sensitive | lineage4.1.1.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None |
|---|
