Rv0486 - c.357T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
2 RR-TB
36 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 4 |
| 23 | |
| lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9 | 12 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.9 | 25 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage2.1 | 2 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage5.2 | 2 |
| lineage4.8 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3804155 | Other | lineage4.1.2.1 | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7240033 | Other | La1.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4815604 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR29097004 | Other | lineage3 | None | SRR6045526 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4800341 | Other | None | ERR4816999 | Other | None | SRR11662694 | Other | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR3675248 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR176779 | HR-TB | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9117721 | HR-TB | None | ERR212138 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR181887 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None |
|---|
