Rv0565c - c.1173G>C
Drug resistance types
96 Sensitive
4 RR-TB
32 HR-TB
36 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
87 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.2.3 | 110 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9 | 19 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 4 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.7;lineage4.9 | 1 |
| 15 | |
| lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.1;lineage4.9 | 14 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 7 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 9 |
| La3;lineage4.9 | 3 |
| lineage4 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| La3;lineage2 | 1 |
| lineage2.1 | 3 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage4.1.2.1;lineage6.2.3 | 2 |
| lineage4.1.3 | 2 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.5 | 1 |
| La1.2.BCG | 1 |
| lineage3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 259 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787261 | Sensitive | lineage6.2.3 | None | SRR21710575 | Sensitive | lineage6.2.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR3801616 | Sensitive | lineage6.2.3 | None | ERR551438 | Sensitive | lineage6.2.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR3675572 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR4815604 | Other | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR25827682 | Other | None | ERR1023280 | Sensitive | lineage6.2.3 | None | SRR21690035 | Sensitive | lineage6.2.3 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR9787379 | Sensitive | lineage6.2.3 | None | SRR18911881 | Sensitive | lineage6.2.3 | None | ERR9894636 | Sensitive | lineage6.2.3 | None | ERR5863146 | Sensitive | lineage6.2.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3800960 | Other | lineage6.2.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3803966 | Other | lineage6.2.3 | None | SRR7517687 | Sensitive | lineage6.2.3 | ci | ERR9787271 | Sensitive | lineage6.2.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR3801002 | Sensitive | lineage6.2.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR11082975 | Other | lineage6.2.3 | None | ERR3804007 | Sensitive | lineage6.2.3 | None | ERR10680115 | RR-TB | lineage6.2.3 | None | ERR3283044 | Other | lineage4 | None | ERR4192564 | Sensitive | lineage6.2.3 | None | ERR9787040 | Other | lineage6.2.3 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4192357 | Sensitive | lineage6.2.3 | None | ERR4829212 | Sensitive | lineage6.2.3 | None | ERR10849240 | Sensitive | lineage6.2.3 | None | ERR3803993 | Sensitive | lineage6.2.3 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR21727754 | Sensitive | lineage6.2.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3806836 | Sensitive | lineage6.2.3 | None | ERR1023262 | Sensitive | lineage6.2.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3804158 | Sensitive | lineage6.2.3 | None | ERR10680019 | MDR-TB | lineage6.2.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR12268479 | Sensitive | lineage6.2.3 | None | SRR1196546 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3803811 | Sensitive | lineage6.2.3 | None | ERR11044630 | Sensitive | lineage6.2.3 | None | ERR3804018 | Sensitive | lineage6.2.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | ERR11049478 | Sensitive | lineage6.2.3 | None | SRR6046594 | Other | lineage4.9 | None | SRR998628 | Sensitive | lineage6.2.3 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR998630 | Sensitive | lineage6.2.3 | None | SRR18289181 | Sensitive | lineage6.2.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR6789626 | Other | None | SRR7535086 | Other | None | SRR18213713 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675236 | Other | None | ERR4816999 | Other | None | SRR28119777 | Other | lineage4.9 | None | ERR552294 | Sensitive | lineage6.2.3 | de | ERR2446369 | Sensitive | lineage6.2.3 | nl | ERR3170426 | Sensitive | lineage6.2.3 | gh | ERR2517500 | Sensitive | lineage6.2.3 | nl | ERR551419 | Sensitive | lineage6.2.3 | None | ERR3275199 | Sensitive | lineage6.2.3 | nl | SAMEA2533942 | Sensitive | lineage6.2.3 | None | ERR550942 | Sensitive | lineage6.2.3 | None | ERR4192565 | Sensitive | lineage6.2.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR551439 | Sensitive | lineage6.2.3 | None | SRR8649120 | Sensitive | lineage6.2.3 | None | ERR9787287 | Sensitive | lineage6.2.3 | None | SRR998631 | Sensitive | lineage6.2.3 | None | ERR551831 | Sensitive | lineage6.2.3 | None | ERR11050062 | Sensitive | lineage6.2.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR11067442 | Sensitive | lineage6.2.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR21658761 | Sensitive | lineage6.2.3 | None | SRR998629 | Sensitive | lineage6.2.3 | None | ERR9787249 | Sensitive | lineage6.2.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR1023268 | Sensitive | lineage6.2.3 | None | ERR9787240 | Sensitive | lineage6.2.3 | None | ERR12544072 | Sensitive | lineage4.1.2.1;lineage6.2.3 | None | ERR11067689 | Sensitive | lineage6.2.3 | None | ERR9787222 | Sensitive | lineage6.2.3 | None | SRR7131015 | Sensitive | lineage6.2.3 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR9787143 | Sensitive | lineage6.2.3 | None | ERR10680114 | MDR-TB | lineage6.2.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1023226 | Sensitive | lineage6.2.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4162021 | Sensitive | lineage6.2.3 | None | ERR1203062 | Sensitive | lineage6.2.3 | gh | ERR3806456 | Sensitive | lineage6.2.3 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR10680108 | MDR-TB | lineage6.2.3 | None | ERR11068084 | Sensitive | lineage6.2.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR26159043 | Other | lineage4.9 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787116 | Other | lineage6.2.3 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3804022 | Sensitive | lineage6.2.3 | None | ERR9787085 | Sensitive | lineage6.2.3 | None | ERR9787313 | Sensitive | lineage6.2.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4821969 | Sensitive | lineage6.2.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR9787288 | Sensitive | lineage6.2.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR9787121 | Other | lineage6.2.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9787060 | Sensitive | lineage6.2.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787055 | Other | lineage6.2.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1023232 | Sensitive | lineage6.2.3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR9787228 | Sensitive | lineage6.2.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4816403 | Other | lineage6.2.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR26124837 | Sensitive | lineage6.2.3 | None | ERR11081708 | Sensitive | lineage6.2.3 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3803791 | Other | lineage6.2.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR439987 | Sensitive | lineage6.2.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR4192378 | Sensitive | lineage6.2.3 | None | ERR9786671 | Other | None | ERR2514692 | Other | None | ERR9787342 | Sensitive | lineage6.2.3 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR2181458 | Sensitive | lineage6.2.3 | gh | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR752229 | Other | lineage4.5 | None | SRR1196583 | Other | lineage4.9 | None | ERR3804153 | Sensitive | lineage6.2.3 | None | SRR21722117 | Sensitive | lineage6.2.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR10679993 | MDR-TB | lineage6.2.3 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR5341330 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR11082792 | Sensitive | lineage6.2.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787229 | Sensitive | lineage6.2.3 | None | ERR11081213 | Sensitive | lineage6.2.3 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7131078 | Sensitive | lineage6.2.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | ERR9787178 | Sensitive | lineage6.2.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR551440_ERR551439_ERR551438 | Sensitive | lineage6.2.3 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9787245 | Sensitive | lineage6.2.3 | None | ERR4828921 | Sensitive | lineage6.2.3 | None | ERR3806845 | Sensitive | lineage6.2.3 | None | ERR551830 | Sensitive | lineage6.2.3 | None | SRR21658384 | Sensitive | lineage6.2.3 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2679289 | HR-TB | lineage4.1.2.1;lineage6.2.3 | None | ERR2027253 | Other | lineage6.2.3 | None | ERR4192377 | Sensitive | lineage6.2.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4192566 | Sensitive | lineage6.2.3 | None | ERR3804029 | Sensitive | lineage6.2.3 | None | ERR11050232 | Sensitive | lineage6.2.3 | None | ERR9787305 | Sensitive | lineage6.2.3 | None | ERR11049207 | Sensitive | lineage6.2.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None |
|---|
