Rv0006 - c.1449C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
1 RR-TB
20 HR-TB
7 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 4 |
| 20 | |
| lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 2 |
| lineage4.9 | 19 |
| M.canetti;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| lineage3 | 2 |
| lineage2.2.1 | 8 |
| lineage4.3.4.2 | 1 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.3 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4 | 2 |
| La3;lineage4.9 | 2 |
| lineage4.2.1 | 1 |
| lineage2.1 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage6 | 1 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 103 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | SRR6045526 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6789626 | Other | None | ERR4810741 | HR-TB | None | ERR4811142 | RR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4811075 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | SRR12416824 | HR-TB | None | ERR9117709 | Other | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR3675572 | Other | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR6358979 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4800341 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR9117721 | HR-TB | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR11972320 | Sensitive | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR28044634 | Other | lineage3 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675457 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675275 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | SRR7240033 | Other | La1.8.1 | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None |
|---|
