Rv0006 - c.1917C>T
Drug resistance types
25 Sensitive
1 RR-TB
10 HR-TB
17 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
72 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 13 |
| lineage4.3.4.1 | 8 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| lineage4.8.1 | 1 |
| lineage4.4.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti | 1 |
| La3;M.canetti | 10 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| 10 | |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage1.2.2.2 | 8 |
| La2;M.canetti | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 8 |
| lineage4.6.1.1 | 1 |
| lineage2.2 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 4 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage3 | 2 |
| lineage1.2.1.2 | 3 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.2 | 1 |
| lineage4 | 1 |
| lineage2.1 | 1 |
| lineage4.1.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1 | 5 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage6.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.1;lineage4.8 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage6.3.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 126 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR10808406 | Sensitive | lineage4.3.4.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR2184203 | Sensitive | lineage4.3.4.1 | pe | ERR266124 | Other | M.canetti | None | SRR3675311 | Other | lineage4.9 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4818615 | Sensitive | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR22251554 | Sensitive | lineage1.2.2.2 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2184204 | Sensitive | lineage4.3.4.1 | pe | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR30336509 | Sensitive | lineage1.2.1.2 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR10808446 | Sensitive | lineage4.3.4.1 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29017226 | MDR-TB | lineage1.2.2.2 | None | SRR3675236 | Other | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3283044 | Other | lineage4 | None | SRR29017381 | MDR-TB | lineage1.2.2.2 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR30336513 | Sensitive | lineage1.2.1.2 | None | ERR702406 | Other | lineage2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR1043164 | Other | La3;M.canetti | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6797811 | MDR-TB | lineage1.2.2.2 | None | ERR1043163 | Other | La3;M.canetti | None | ERR9786843 | Other | None | SRR10808323 | Sensitive | lineage4.3.4.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR10808445 | Sensitive | lineage4.3.4.1 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR2184314 | Sensitive | lineage4.3.4.1 | pe | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2027217 | Sensitive | lineage1.2.2.2 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR4816585 | Other | lineage2.2 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR6046066 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4816999 | Other | None | ERR3597006 | Other | La3;M.canetti | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4816669 | Sensitive | lineage1.2.2.2 | gb | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR9117709 | Other | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR7496472 | Other | lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR3797070 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4798630 | Sensitive | lineage1.2.2.2 | in | ERR266125 | Other | La3;M.canetti | None | SRR18213713 | HR-TB | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2184239 | Sensitive | lineage4.3.4.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR3797069 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR7496517 | Other | None | SRR30336512 | Sensitive | lineage1.2.1.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR22251400 | Sensitive | lineage1.2.2.2 | None | ERR3283032 | Other | lineage4.9 | None |
|---|
