Rv0006 - c.1917C>T
Drug resistance types
15 Sensitive
1 RR-TB
33 HR-TB
8 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
60 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 2 |
| lineage4.9 | 10 |
| lineage4.5 | 1 |
| 54 | |
| lineage4 | 7 |
| lineage2.2.1 | 9 |
| lineage1.2.2.2 | 6 |
| lineage2.2 | 2 |
| lineage4.4.1.1 | 1 |
| lineage4.3.4.1 | 8 |
| lineage4;lineage1.1 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.7 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.1.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 117 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR17658565 | Other | lineage3 | None | SRR8692893 | Other | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR8692905 | HR-TB | None | SRR8692898 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675502 | Other | None | SRR6797811 | MDR-TB | lineage1.2.2.2 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675234 | Other | None | SRR3675236 | HR-TB | None | SRR3675311 | Other | None | ERR4816585 | Other | lineage2.2 | None | ERR4816999 | Other | None | SRR3675572 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR2027217 | Sensitive | lineage1.2.2.2 | None | SRR3675550 | Other | None | ERR2184239 | Sensitive | lineage4.3.4.1 | None | ERR1035162 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4818615 | Other | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4819280 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341418 | Other | None | ERR2693230 | Other | None | ERR2693231 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6044838 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045399 | Other | None | SRR6046305 | Other | lineage4.9 | None | ERR4798630 | Sensitive | lineage1.2.2.2 | in | SRR6046824 | HR-TB | None | ERR4816669 | Sensitive | lineage1.2.2.2 | gb | ERR2184314 | Sensitive | lineage4.3.4.1 | pe | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR2184203 | Sensitive | lineage4.3.4.1 | pe | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR2184204 | Sensitive | lineage4.3.4.1 | pe | SRR8217918 | HR-TB | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | ERR067699 | HR-TB | lineage4 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | ERR067681 | HR-TB | None | ERR3283024 | Other | None | ERR133986 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3797044 | Other | None | ERR3597006 | Sensitive | None | ERR3797017 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3797014 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4553814 | MDR-TB | None | ERR5336148 | Other | None | ERR4769474 | HR-TB | lineage4 | None | ERR4798406 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR22251554 | Sensitive | lineage1.2.2.2 | None | SRR22251400 | Sensitive | lineage1.2.2.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9117709 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786843 | Other | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1183049 | Other | lineage2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808323 | Sensitive | lineage4.3.4.1 | None | SRR10808406 | Sensitive | lineage4.3.4.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR10808445 | Sensitive | lineage4.3.4.1 | None | SRR10808446 | Sensitive | lineage4.3.4.1 | None | SRR1180137 | Other | lineage2.2.1 | None |
|---|
