Rv0006 - c.141G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
29 Sensitive
2 RR-TB
21 HR-TB
5 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| La3;lineage4.9 | 12 |
| La1.7;lineage4.9 | 3 |
| 4 | |
| lineage4.9 | 47 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.6.1.1 | 2 |
| lineage3 | 1 |
| lineage4.1.2 | 1 |
| La1.8.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.6 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;lineage4 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | ERR2514692 | Other | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR22249706 | Sensitive | lineage4.5 | None | ERR11252736 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR13265708 | Sensitive | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | ERR3283032 | Other | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7240033 | Other | La1.8.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR11268038 | Other | La1.6 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6046878 | Other | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None |
|---|
