lineage | Count |
---|---|
115 | |
lineage2.2 | 3 |
lineage3 | 1 |
lineage2.2.1 | 39 |
lineage4.6.1.1 | 2 |
La1.2 | 1 |
lineage4;lineage2.2.1 | 1 |
lineage4.1.2.1 | 8 |
lineage4.6.2.2 | 1 |
lineage4.8 | 2 |
lineage4.1.1 | 2 |
lineage4.1.3 | 2 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage4.3.3 | 3 |
lineage4 | 18 |
lineage4.9 | 9 |
lineage2.2.1.1 | 2 |
lineage3.1 | 2 |
lineage4.5 | 1 |
lineage4.3.4.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage2 | 2 |
lineage4.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.8;La3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.7 | 2 |
lineage4.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4;lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 228 |
ID | Drug resistance | Lineage | Country iso2 | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4812089 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR5336148 | Other | None | ERR4812074 | Sensitive | lineage2.2.1 | None | ERR4812676 | Sensitive | lineage2.2.1 | None | ERR4812417 | Sensitive | lineage2.2.1 | pe | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6198317 | Other | La1.2 | None | ERR6865484 | Sensitive | lineage2.2.1 | None | ERR6358991 | HR-TB | None | ERR6866729 | Sensitive | lineage2.2.1 | None | ERR6866712 | Sensitive | lineage4;lineage2.2.1 | None | ERR6866614 | Sensitive | lineage2.2.1 | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR736874 | HR-TB | None | ERR736848 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR7801190 | Sensitive | lineage4.6.1.1 | None | ERR751360 | MDR-TB | lineage2.2.1 | pe | ERR9117709 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1172951 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | ERR9787197 | Other | None | SRR10808379 | Other | lineage2.2.1 | None | SRR1172234 | Other | None | SRR1172857 | MDR-TB | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1175049 | RR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR12830376 | Sensitive | lineage4.3.3 | None | SRR12416824 | HR-TB | None | SRR12830413 | HR-TB | lineage4.3.3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR19303884 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19276613 | HR-TB | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR3675465 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | ERR176778 | HR-TB | None | ERR4812937 | Sensitive | lineage2.2.1 | pe | ERR158583 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR4813157 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4813315 | MDR-TB | lineage2.2.1 | None | ERR176643 | HR-TB | None | ERR4813350 | MDR-TB | lineage2.2.1 | pe | ERR2229542 | Other | lineage4.8 | None | SRR3675311 | Other | None | SRR3675387 | Sensitive | None | ERR181887 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | SRR3675572 | Other | None | ERR4817060 | RR-TB | None | ERR4816466 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816656 | HR-TB | None | ERR2184264 | Other | lineage2.2.1 | pe | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4819051 | Other | lineage4 | None | ERR234659 | HR-TB | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4818615 | Other | None | ERR4818929 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2516546 | Pre-XDR-TB | lineage2.2.1 | pe | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2693231 | Other | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341456 | Other | None | ERR2693230 | Other | None | SRR6044835 | Sensitive | lineage4 | None | SRR5535933 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6044780 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | ERR4829033 | Sensitive | lineage2.2.1 | it | SRR6045217 | Other | lineage4 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046824 | HR-TB | None | ERR502943 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR294266 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | SRR8649115 | Sensitive | lineage2.2.1 | None | ERR1034634 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR108471 | HR-TB | lineage4 | None | ERR1063857 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283027 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283024 | Other | None | ERR3439432 | Other | None | ERR3287357 | Other | lineage2.2.1 | pe | ERR3283036 | HR-TB | None | ERR3287623 | MDR-TB | lineage2.2.1 | pe | ERR3287750 | MDR-TB | lineage2.2.1 | pe | ERR3797017 | Other | None | ERR3445504 | HR-TB | None | ERR3797014 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR387051 | HR-TB | None | ERR4024925 | Sensitive | lineage2.2.1 | None | ERR4178218 | Sensitive | lineage2.2.1 | None | ERR4457771 | Sensitive | lineage2.2.1 | None | ERR4407463 | HR-TB | None | ERR4457765 | Sensitive | lineage2.2.1 | None | ERR4457769 | Sensitive | lineage2.2.1 | None | ERR4188247 | HR-TB | None | ERR4457767 | Sensitive | lineage2.2.1 | None | ERR4457766 | HR-TB | lineage2.2.1 | None | ERR4457770 | Sensitive | lineage2.2.1 | None | ERR4457768 | Sensitive | lineage2.2.1 | None | ERR4457772 | Other | lineage2.2.1 | None | ERR4457773 | Sensitive | lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798406 | HR-TB | None |
---|