Rv3696c - c.1134C>G
Drug resistance types
3 Sensitive
4 RR-TB
31 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
92 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.9;lineage6.3 | 3 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.9 | 29 |
| lineage2.1 | 3 |
| lineage2.1;lineage4.9 | 10 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;lineage4.9 | 10 |
| lineage4.1.1.1 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.2.1 | 7 |
| La3;lineage2 | 1 |
| lineage4.1.2 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.7 | 1 |
| lineage4 | 2 |
| 12 | |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage1.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1 | 5 |
| lineage4.6.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.8.1 | 1 |
| La1;lineage4.9 | 1 |
| La1;lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6045526 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR1196546 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR6045053 | Other | lineage4 | None | ERR9786671 | Other | None | ERR234659 | HR-TB | None | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2027263 | Other | lineage4 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR9786604 | Other | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4769450 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR2514692 | Other | None | ERR4407463 | HR-TB | None | SRR1196768 | MDR-TB | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None |
|---|
