lineage | Count |
---|---|
La1.7.X-unk4;lineage4.9 | 1 |
lineage4.9 | 61 |
La2;lineage4.9 | 1 |
lineage2.2.1 | 5 |
La1.7;lineage4.9 | 2 |
lineage2.2 | 1 |
lineage2.1;lineage4.9;lineage7 | 1 |
lineage4.9;lineage6.1.3 | 1 |
La3;lineage4.9 | 1 |
M.canetti;lineage4.9;lineage9 | 1 |
lineage4.1.2 | 1 |
lineage4 | 1 |
lineage4.3.1;lineage4.9;lineage6 | 1 |
lineage2.1;lineage4.9 | 2 |
La1.2;La1.8.1 | 1 |
M.canetti;lineage1 | 1 |
lineage4.9;lineage7 | 4 |
lineage4.1.2.1 | 2 |
lineage4.8;lineage4.9 | 2 |
La1;lineage4.9 | 1 |
lineage4.5 | 1 |
La2;lineage2.2 | 1 |
lineage4.8 | 1 |
La3;lineage4.3.4 | 1 |
lineage4.3.2.1 | 1 |
lineage4.9;lineage9 | 1 |
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
La1.2.BCG | 1 |
La1.6;lineage4 | 1 |
lineage2.2.1.2;lineage7 | 1 |
spoligotype | Count |
---|---|
None | 101 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736848 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6046878 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None |
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