lineage | Count |
---|---|
lineage4.3.4.2 | 4 |
lineage1.1.3.1 | 1 |
116 | |
lineage4.8 | 3 |
lineage4.8;lineage4.1 | 1 |
lineage4 | 44 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 1 |
lineage4.9 | 9 |
lineage2.2.1 | 7 |
lineage9;lineage3.1 | 1 |
lineage2.2 | 5 |
lineage4.1 | 2 |
La1.2 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3.4 | 1 |
lineage1.2.1.1 | 1 |
lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
La1.8.1 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.6.2.2 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage2.2.1.1 | 1 |
lineage4.3.2.1 | 1 |
lineage3.1 | 2 |
lineage4.1.2 | 1 |
lineage4.4.1.2 | 1 |
La1 | 1 |
lineage4.3.2 | 1 |
spoligotype | Count |
---|---|
None | 219 |
ID | Drug resistance | Lineage | Country iso2 | ERR8774409 | Sensitive | lineage4.3.4.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119669 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9634265 | Sensitive | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR14782405 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR16370363 | Sensitive | lineage4.3.4.2 | None | SRR14801749 | Sensitive | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR2101750 | Sensitive | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR11082084 | Sensitive | lineage4.8 | None | SRR21733154 | Sensitive | lineage4.3.4.2 | None | SRR23961549 | Other | La1.2 | None | ERR11081888 | Sensitive | lineage4.8 | None | ERR176751 | HR-TB | None | SRR6325445 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | ERR181744 | HR-TB | None | SRR3675222 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR176643 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675501 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675555 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | ERR212123 | Other | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816656 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | SRR5341453 | Sensitive | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR234659 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341418 | Other | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR2514692 | Other | None | SRR5341303 | RR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341330 | HR-TB | None | SRR5341469 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | ERR2693257 | Other | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | SRR6045053 | Other | None | SRR6046225 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046299 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR323036 | HR-TB | None | SRR6982436 | Sensitive | lineage2.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6981944 | Sensitive | lineage4.3.2.1 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR502889 | Other | None | ERR502510 | Sensitive | lineage4 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323039 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1034634 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR1063883 | Sensitive | lineage4 | None | ERR11049096 | Sensitive | lineage4.3.4.2 | None | ERR1063859 | HR-TB | None | ERR1063862 | HR-TB | None | ERR133986 | HR-TB | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR363453 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR349266 | Sensitive | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3797017 | Other | None | ERR363506 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR4769452 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4798099 | Other | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None |
---|