lineage | Count |
---|---|
67 | |
lineage2.2.1 | 8 |
lineage4.9 | 8 |
lineage4 | 12 |
lineage4.4.1.1 | 1 |
lineage2.2 | 5 |
La1.8.1 | 2 |
lineage3 | 2 |
lineage4.1 | 1 |
lineage4.1.2.1 | 7 |
lineage4.8.1 | 1 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.4.2 | 1 |
lineage4.1.3 | 2 |
lineage6.1.1 | 2 |
lineage4;lineage3.1 | 1 |
lineage1.2.2.2 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.8 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 135 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675465 | HR-TB | None | ERR4815604 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | ERR4816999 | Other | None | SRR3675311 | Other | None | SRR3675456 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | None | ERR212034 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675572 | Other | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | SRR5341333 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4818615 | Other | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496472 | Other | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | SRR5341456 | Other | None | SRR5341330 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6044855 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6046492 | Other | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6044876 | Sensitive | lineage4 | None | SRR6046299 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046460 | HR-TB | None | SRR6046540 | HR-TB | None | ERR323043 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR502524 | HR-TB | La2 | None | SRR7535086 | Other | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR323045 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283055 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063859 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283047 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR5336148 | Other | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797069 | Other | None | ERR3797064 | Sensitive | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4769452 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4828809 | Sensitive | lineage4.1.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9117709 | HR-TB | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787165 | Other | lineage6 | None | SRR1172310 | HR-TB | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR14782405 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR12416824 | HR-TB | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR8692887 | Other | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None |
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