lineage | Count |
---|---|
103 | |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 6 |
lineage4;lineage1.1 | 1 |
lineage4 | 18 |
lineage3 | 2 |
lineage4.9 | 6 |
lineage1.1.2 | 4 |
lineage4.1.2.1 | 5 |
lineage4.6.2.2 | 2 |
lineage1.1 | 1 |
lineage5.2 | 2 |
lineage2.2 | 5 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
La1.8.1 | 2 |
La1.2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1 | 1 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
spoligotype | Count |
---|---|
None | 183 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675510 | Other | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212034 | HR-TB | None | ERR212123 | Other | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675571 | HR-TB | None | ERR2514692 | Other | None | ERR4816656 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035138 | MDR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818929 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2693239 | HR-TB | None | SRR5341467 | Other | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341330 | HR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR6046225 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6325444 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | SRR6511621 | HR-TB | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6442532 | Sensitive | lineage1.1.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311099 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR323055 | HR-TB | None | ERR323039 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR323115 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4797474 | Other | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR702404 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866410 | Sensitive | None | ERR736839 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119669 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR8976043 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786843 | Other | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR987722 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR11342378 | HR-TB | lineage1.1.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1169306 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1172310 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR1640750 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR21732188 | Sensitive | lineage1.1.2 | None | SRR24061594 | HR-TB | lineage1.1.2 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR161033 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675501 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675222 | Other | None | ERR181744 | HR-TB | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | ERR176740 | HR-TB | None |
---|