lineage | Count |
---|---|
lineage4.1 | 2 |
lineage4.1.2.1 | 9 |
lineage4.8;lineage4.1 | 2 |
lineage4.1.3 | 2 |
lineage4.8 | 1 |
93 | |
lineage6.1.1 | 2 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage2.2.1.1 | 2 |
lineage3 | 3 |
lineage4 | 21 |
lineage2.2.1.2 | 2 |
lineage2.2 | 8 |
lineage2.2.1 | 8 |
lineage2 | 2 |
La1.8.1 | 2 |
lineage4.9 | 9 |
lineage4.5 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2 | 1 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.4.1.2 | 1 |
lineage4.4.2 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.2 | 1 |
spoligotype | Count |
---|---|
None | 188 |
ID | Drug resistance | Lineage | Country iso2 | ERR9786440 | Other | lineage4.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9787165 | Other | lineage6 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR9896144 | Other | lineage3 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR1175074 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR15368973 | Other | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303884 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692905 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692887 | Other | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675221 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675311 | Other | None | ERR4816585 | Other | lineage2.2 | None | SRR3675510 | Other | None | ERR4816466 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR3675550 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR234659 | HR-TB | None | SRR5341418 | Other | None | SRR5007188 | Other | lineage4 | None | SRR5535933 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341456 | Other | None | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6046362 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR4831117 | HR-TB | None | SRR6789626 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR11043515 | Sensitive | lineage4.1.2.1 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797064 | Sensitive | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796577 | MDR-TB | None | ERR4798406 | HR-TB | None | ERR4797474 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR5336148 | Other | None | ERR4811493 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117709 | HR-TB | None |
---|