Rv3596c - c.501G>C
Drug resistance types
15 Sensitive
3 RR-TB
34 HR-TB
8 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 4 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 6 |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4.9 | 3 |
| lineage4.9 | 42 |
| lineage4.1.2.1 | 12 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 7 |
| lineage4.8 | 2 |
| lineage6.1.1 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2 | 5 |
| lineage4 | 2 |
| 11 | |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.3 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage4.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.4.2 | 1 |
| La3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.5 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| La1.8.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 160 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR6045053 | Other | lineage4 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR4815604 | Other | None | SRR6789626 | Other | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR29096150 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4800341 | Other | lineage3 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR234659 | Other | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR6045555 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786604 | Other | None | SRR6046878 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR29097026 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR18213713 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046046 | Other | lineage4.9 | None | ERR551686 | Sensitive | lineage4.1.2.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675236 | Other | None | DRR188519 | Other | lineage4.4.2 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9786843 | Other | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR752229 | Other | lineage4.5 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR9896144 | Other | lineage3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR11043515 | Sensitive | lineage4.1.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR20970016 | Other | lineage2.2 | None |
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