TB-Profiler result

Run: a484d53f-623e-4c21-a305-e9271fc492b5

Summary

Run ID: a484d53f-623e-4c21-a305-e9271fc492b5

Sample name:

Date: 20-07-2023 14:10:04

Number of reads: 211

Percentage reads mapped: 0.48

Median coverage: 0

Strain:

Spoligotype:

Drug-resistance: Sensitive


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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
moxifloxacin
levofloxacin
bedaquiline
delamanid
pretomanid
linezolid
streptomycin
amikacin
kanamycin
capreomycin
clofazimine
ethionamide
para-aminosalicylic_acid
cycloserine
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
rrs 1471929 n.84C>G non_coding_transcript_exon_variant 0.74 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.92 linezolid
kanamycin
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 0.92 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.83 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.91 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.83 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472057 n.212C>T non_coding_transcript_exon_variant 0.86 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.79 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.93 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.9 linezolid
kanamycin
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.85 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472301 n.456C>T non_coding_transcript_exon_variant 0.79 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.96 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.92 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.89 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.81 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.89 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.91 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.91 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrl 1473676 n.19G>A non_coding_transcript_exon_variant 0.94 linezolid Uncertain significance
rrl 1473679 n.22T>C non_coding_transcript_exon_variant 0.74 linezolid
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.88 linezolid
rrl 1473718 n.61G>T non_coding_transcript_exon_variant 0.91 linezolid
rrl 1473721 n.64G>A non_coding_transcript_exon_variant 0.87 linezolid
rrl 1473722 n.65G>T non_coding_transcript_exon_variant 0.92 linezolid
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.95 linezolid
rrl 1473744 n.87T>C non_coding_transcript_exon_variant 0.87 linezolid
rrl 1473746 n.89T>A non_coding_transcript_exon_variant 0.91 linezolid
rrl 1473747 n.90C>T non_coding_transcript_exon_variant 0.91 linezolid
rrl 1473751 n.94C>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1473753 n.96A>G non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.88 linezolid
rrl 1473787 n.130C>T non_coding_transcript_exon_variant 0.93 linezolid
rrl 1473788 n.131A>G non_coding_transcript_exon_variant 0.95 linezolid
rrl 1473791 n.134A>T non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473792 n.136delG non_coding_transcript_exon_variant 1.0 linezolid
rrl 1473795 n.138G>T non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473797 n.140G>C non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473801 n.144T>G non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473802 n.145C>T non_coding_transcript_exon_variant 0.89 linezolid
rrl 1473804 n.147T>A non_coding_transcript_exon_variant 0.92 linezolid
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473811 n.154C>G non_coding_transcript_exon_variant 0.95 linezolid
rrl 1473812 n.155G>C non_coding_transcript_exon_variant 0.93 linezolid
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.91 linezolid
rrl 1473822 n.165A>G non_coding_transcript_exon_variant 0.98 linezolid
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.9 linezolid
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.95 linezolid
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.9 linezolid
rrl 1473884 n.227C>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.95 linezolid
rrl 1473889 n.232G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1473896 n.239C>T non_coding_transcript_exon_variant 0.89 linezolid
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.97 linezolid Uncertain significance
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.88 linezolid
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473926 n.269G>A non_coding_transcript_exon_variant 0.93 linezolid
rrl 1473934 n.277G>T non_coding_transcript_exon_variant 0.81 linezolid
rrl 1473935 n.278C>G non_coding_transcript_exon_variant 0.96 linezolid
rrl 1473936 n.279A>T non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473937 n.280C>G non_coding_transcript_exon_variant 0.96 linezolid
rrl 1473939 n.282C>T non_coding_transcript_exon_variant 0.88 linezolid
rrl 1473940 n.283A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.88 linezolid
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.81 linezolid
rrl 1473948 n.291C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1473952 n.295G>T non_coding_transcript_exon_variant 0.93 linezolid
rrl 1473957 n.300G>C non_coding_transcript_exon_variant 0.93 linezolid
rrl 1473962 n.305T>C non_coding_transcript_exon_variant 0.97 linezolid
rrl 1473963 n.306G>A non_coding_transcript_exon_variant 0.9 linezolid
rrl 1473984 n.327T>C non_coding_transcript_exon_variant 0.83 linezolid
rrl 1473985 n.329delT non_coding_transcript_exon_variant 0.91 linezolid
rrl 1473989 n.332C>G non_coding_transcript_exon_variant 0.76 linezolid
rrl 1473994 n.337C>T non_coding_transcript_exon_variant 0.85 linezolid
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.7 linezolid
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.79 linezolid Uncertain significance
rrl 1474019 n.362A>G non_coding_transcript_exon_variant 0.92 linezolid
rrl 1474030 n.375delT non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474035 n.378C>G non_coding_transcript_exon_variant 0.92 linezolid
rrl 1474036 n.379G>T non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474043 n.386G>A non_coding_transcript_exon_variant 0.89 linezolid
rrl 1474045 n.388C>T non_coding_transcript_exon_variant 0.72 linezolid
rrl 1474049 n.392G>A non_coding_transcript_exon_variant 0.87 linezolid
rrl 1474056 n.399T>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474065 n.408C>G non_coding_transcript_exon_variant 0.95 linezolid
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 0.82 linezolid
rrl 1474077 n.420G>C non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474081 n.424C>A non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474082 n.425G>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1474091 n.434C>T non_coding_transcript_exon_variant 0.84 linezolid
rrl 1474095 n.438A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474103 n.446A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474106 n.449A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474107 n.450T>G non_coding_transcript_exon_variant 0.75 linezolid
rrl 1474109 n.452A>C non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474110 n.454_455delTT non_coding_transcript_exon_variant 0.95 linezolid
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.85 linezolid
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.89 linezolid
rrl 1474142 n.486delT non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.95 linezolid
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.87 linezolid
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.78 linezolid
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.83 linezolid
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.77 linezolid
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.71 linezolid
rrl 1474309 n.653delT non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.72 linezolid
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474435 n.778G>T non_coding_transcript_exon_variant 0.89 linezolid
rrl 1474437 n.782_784delATA non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.81 linezolid
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.95 linezolid
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.85 linezolid
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.8 linezolid
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.8 linezolid
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.82 linezolid
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.85 linezolid
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.81 linezolid
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.83 linezolid
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.83 linezolid
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.91 linezolid
rrl 1474948 n.1291C>T non_coding_transcript_exon_variant 0.83 linezolid
rrl 1474952 n.1296delC non_coding_transcript_exon_variant 0.89 linezolid
rrl 1474961 n.1304T>C non_coding_transcript_exon_variant 0.73 linezolid
rrl 1474970 n.1313G>T non_coding_transcript_exon_variant 0.75 linezolid
rrl 1474990 n.1333C>T non_coding_transcript_exon_variant 0.82 linezolid
rrl 1474991 n.1334T>G non_coding_transcript_exon_variant 0.73 linezolid
rrl 1474997 n.1340A>G non_coding_transcript_exon_variant 0.8 linezolid
rrl 1474999 n.1342C>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1475031 n.1374G>T non_coding_transcript_exon_variant 0.92 linezolid
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.81 linezolid
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.79 linezolid
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.86 linezolid Uncertain significance
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.94 linezolid
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.95 linezolid
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.8 linezolid
rrl 1475602 n.1945G>T non_coding_transcript_exon_variant 0.72 linezolid
rrl 1475614 n.1957A>G non_coding_transcript_exon_variant 0.9 linezolid
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.82 linezolid
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.81 linezolid
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.77 linezolid
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.86 linezolid
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.9 linezolid
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.86 linezolid
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.83 linezolid
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.82 linezolid
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.86 linezolid
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.75 linezolid Uncertain significance
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.73 linezolid
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.92 linezolid
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.82 linezolid
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.82 linezolid
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.75 linezolid
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.83 linezolid
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.8 linezolid
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance