TB-Profiler result

Run: 8d57ef01-e8b8-40ac-8567-578de617f6db

Summary

Run ID: 8d57ef01-e8b8-40ac-8567-578de617f6db

Sample name:

Date: 04-03-2024 15:48:52

Number of reads: 92896

Percentage reads mapped: 1.48

Median coverage: 0

Strain: lineage4.9;lineage4.4

Spoligotype:

Drug-resistance: Other


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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage4.9 Euro-American (H37Rv-like) None 1.0
lineage4.4 Euro-American None 0.75
lineage1.2.1.2 Indo-Oceanic RD239 0.96
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
moxifloxacin
levofloxacin
bedaquiline
delamanid
pretomanid
linezolid
streptomycin rrs n.799C>T Uncertain significance
n.888G>A Uncertain significance
amikacin rrs n.1402C>A Uncertain significance
n.1484G>T Assoc w R - interim
kanamycin rrs n.1402C>A Uncertain significance
n.1484G>T Assoc w R
capreomycin rrs n.1402C>A Uncertain significance
n.1484G>T Assoc w R
clofazimine
ethionamide
para-aminosalicylic_acid
cycloserine
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.52 streptomycin Uncertain significance
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.43 streptomycin Uncertain significance
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.96 kanamycin Uncertain significance
capreomycin Uncertain significance
aminoglycosides Uncertain significance
amikacin Uncertain significance
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.98 kanamycin Assoc w R
capreomycin Assoc w R
aminoglycosides Uncertain significance
amikacin Assoc w R - interim
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
rpoC 764605 c.1236G>T synonymous_variant 1.0 rifampicin
rpoC 764611 c.1242G>T synonymous_variant 1.0 rifampicin
rpoC 764626 c.1257C>T synonymous_variant 0.69 rifampicin
rpoC 764632 c.1263T>C synonymous_variant 0.4 rifampicin
rpoC 764635 c.1266C>T synonymous_variant 0.6 rifampicin
rpoC 764647 c.1278C>T synonymous_variant 0.69 rifampicin
rpoC 764650 c.1281G>T synonymous_variant 1.0 rifampicin
rpoC 764653 c.1284G>C synonymous_variant 0.69 rifampicin
rpoC 764656 c.1287C>G synonymous_variant 0.69 rifampicin
rpoC 764659 c.1290C>T synonymous_variant 0.69 rifampicin
rpoC 764665 c.1296C>T synonymous_variant 0.69 rifampicin
rpoC 764668 c.1299C>T synonymous_variant 0.85 rifampicin
rpoC 764671 c.1302G>T synonymous_variant 0.69 rifampicin
rpoC 764672 p.Gln435Thr missense_variant 0.15 rifampicin
rpoC 764677 c.1308C>G synonymous_variant 1.0 rifampicin
rpoC 764678 p.Lys437Gln missense_variant 0.82 rifampicin
rpoC 764681 p.Leu438Met missense_variant 0.69 rifampicin
rpoC 764692 c.1323C>T synonymous_variant 0.69 rifampicin
rpoC 764695 c.1326T>C synonymous_variant 0.15 rifampicin
rpoC 764701 c.1332C>G synonymous_variant 0.13 rifampicin
rpoC 764706 p.Leu446Gln missense_variant 0.85 rifampicin
rpoC 764716 c.1347G>C synonymous_variant 0.23 rifampicin
rpoC 764731 c.1362G>C synonymous_variant 0.91 rifampicin
rpoC 764737 c.1368G>C synonymous_variant 0.91 rifampicin
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.2 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.86 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472108 n.263C>A non_coding_transcript_exon_variant 0.18 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.7 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.72 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.22 linezolid
kanamycin Uncertain significance
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 0.19 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472129 n.284G>A non_coding_transcript_exon_variant 0.19 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472135 n.290C>T non_coding_transcript_exon_variant 0.16 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472138 n.293C>T non_coding_transcript_exon_variant 0.15 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472147 n.302G>A non_coding_transcript_exon_variant 0.15 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.15 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 0.16 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.98 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472210 n.365A>T non_coding_transcript_exon_variant 0.22 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 0.23 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.28 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 0.23 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.21 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 0.23 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472251 n.406G>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.27 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472256 n.411T>A non_coding_transcript_exon_variant 0.29 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.3 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472277 n.432C>G non_coding_transcript_exon_variant 0.36 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472279 n.434T>A non_coding_transcript_exon_variant 0.3 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1472349 n.504A>C non_coding_transcript_exon_variant 0.91 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472374 n.529T>G non_coding_transcript_exon_variant 0.77 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.23 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.77 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.67 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472390 n.545T>A non_coding_transcript_exon_variant 0.64 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472391 n.546C>T non_coding_transcript_exon_variant 0.7 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.2 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.23 linezolid
kanamycin
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.77 linezolid
kanamycin Uncertain significance
capreomycin
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.77 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 0.15 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.85 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.33 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.36 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.33 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.47 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.41 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.37 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.4 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.52 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.39 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.5 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.43 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.28 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.29 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.88 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.54 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.36 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.36 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.57 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.33 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.98 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.98 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.39 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.59 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.42 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472669 n.825_829delGGGTT non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.19 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.43 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.56 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.45 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.48 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.52 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.49 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.62 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.43 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.13 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.28 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.19 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.84 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472785 n.940G>T non_coding_transcript_exon_variant 0.11 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472786 n.941C>G non_coding_transcript_exon_variant 0.11 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.2 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.68 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.43 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.55 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.67 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.32 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.58 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.58 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.99 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.36 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.66 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.35 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.35 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.69 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.3 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin Uncertain significance
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.31 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.25 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.29 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.29 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.76 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.2 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.14 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.13 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.81 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.85 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.12 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.1 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.97 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.9 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin Uncertain significance
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.96 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.96 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.93 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.97 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.96 linezolid
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
aminoglycosides
streptomycin
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.96 linezolid
kanamycin Uncertain significance
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.98 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.96 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.98 linezolid
kanamycin
capreomycin
amikacin
aminoglycosides
streptomycin
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.11 linezolid
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.83 linezolid Uncertain significance
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.92 linezolid
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474284 n.631_633delCCT non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474293 n.637_651delCCTCTCCGGAGGAGG non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.92 linezolid
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.96 linezolid
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.98 linezolid
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474674 n.1017A>C non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.95 linezolid
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.84 linezolid
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.8 linezolid
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.79 linezolid
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.14 linezolid
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.93 linezolid
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.79 linezolid
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.13 linezolid
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.88 linezolid
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.94 linezolid
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.9 linezolid
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.91 linezolid
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.1 linezolid
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.97 linezolid
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.93 linezolid
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.93 linezolid
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.94 linezolid
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.99 linezolid
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.99 linezolid
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.98 linezolid
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.18 linezolid
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.85 linezolid
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.15 linezolid
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.15 linezolid
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.12 linezolid
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.12 linezolid
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.12 linezolid
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.87 linezolid
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.15 linezolid
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.13 linezolid
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.12 linezolid
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.79 linezolid
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.19 linezolid
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.2 linezolid
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.78 linezolid
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.77 linezolid
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.77 linezolid
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.21 linezolid
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0 linezolid Uncertain significance
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.24 linezolid
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.74 linezolid
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.2 linezolid
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.97 linezolid
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.97 linezolid
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.91 linezolid
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.68 linezolid
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.73 linezolid
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.24 linezolid
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.66 linezolid
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.97 linezolid
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.97 linezolid
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.21 linezolid
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.32 linezolid
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.21 linezolid
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.44 linezolid
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.46 linezolid Uncertain significance
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.37 linezolid
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.2 linezolid
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.21 linezolid
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.62 linezolid
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.56 linezolid
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.63 linezolid
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.44 linezolid
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.54 linezolid
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.63 linezolid
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.54 linezolid
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.19 linezolid
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.25 linezolid
rrl 1476411 n.2754G>T non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.56 linezolid
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.88 linezolid
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.97 linezolid
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.16 linezolid
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.16 linezolid
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.15 linezolid
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.15 linezolid
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.61 linezolid Uncertain significance
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.92 linezolid
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.2 linezolid
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.72 linezolid
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.2 linezolid
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.94 linezolid
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.86 linezolid Uncertain significance
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.95 linezolid
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.38 linezolid
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.17 linezolid
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.12 linezolid
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.47 linezolid
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0 linezolid
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.54 linezolid
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.5 linezolid
rrl 1476588 n.2931A>G non_coding_transcript_exon_variant 0.14 linezolid
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.58 linezolid